miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|117331560|gb|EG663350.1|EG663350 GGAAAAGGGAGAGACCAGTAGAGAAGACCACCTGATTCAACTACTCCTCCCTCCTAACTTCACCGAACTCACTCCTCTAT
CCATGGCTTTTCTTTTTCTGCTATTTTCTTCTTTATTCCTCATTTAGCTCAATTCAGTCTCTTCCTGTTCCACCTTAAAA
AATAAAAAAGCATCATAAAGAAAAAGATTTATAATTTTGACTACCCTTTCTCACTAGTTAATTAAATGGCAGATGTTGCT
CGATTAATATCTTCTCACTCTCTTCGTTTCTCTTCTTCTCTCATCACCGTCAACGTTAATTCCCTCCCTCCTAATAACTA
TTACTATTCAGATAAGAAGATTTACCCTTTAATTTACTCTTCCTCTTCCTCTGCTGCTAGTGTTCCTCGTTTCTCTTCTA
TGCCCAGAAAGCAATTGCTTTCTTTTAAGGTACATGCAACTGTTGCAGAAACTGACCAGCCAAAATGGTGGGAAAGAAAT
GCAGGGCCAAATATGATTGACATTCATTCTACACAGGAATTTCTGAGTGCCTTGAGTCAAGCTGGAGATAGATTAGTTAT
TGTTGAATTTTATGGAACTTGGTGTGCATCTTGTCGAGCATTATTTCCCAAGCTCTGCAGGACAGCTGAAGAACATCCAG
AGATTTTATTCCTGAAAGTAAATTTTGACGAGAACAAGCCTATGTGCAAAAGTTTGAATGTTAAAGTGCTGCCTTACTTC
CACTTCTATCGGGGTGCTCATGGACAATTAGAATCCTTTTCATGTTCACTTGCTAAGTTTCAAAAATAAAAGACGCCATT
GCATTGCACAGCACGACCCAGAGCAGCAGTGGA




Most similar to sp|Q5TKD8|TRL2_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5TKD8|TRL2_ORYSJ Thioredoxin-like 2, chloroplastic OS=Oryza
           sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1
          Length = 216

 Score =  224 bits (571), Expect = 6e-58
 Identities = 111/143 (77%), Positives = 122/143 (85%), Gaps = 3/143 (2%)
 Frame = +1

Query: 397 SMPRKQLLSFKVHATVAE-TDQPKWWERNAGPNMIDIHSTQEFLSALSQAGDRLVIVEFY 573
           S PR + L  K HA V++ ++QPKWWE+NAGPNMIDIHSTQEFL AL  AGDRLVIVEFY
Sbjct: 50  SPPRHRRL--KAHAAVSDKSEQPKWWEKNAGPNMIDIHSTQEFLDALRDAGDRLVIVEFY 107

Query: 574 GTWCASCRALFPKLCRTAEEHPEILFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 753
           GTWC SCRALFP+LCRTA E+P+ILFLKVNFDENKPMCK LNVKVLPYFHFYRGA GQLE
Sbjct: 108 GTWCGSCRALFPRLCRTAVENPDILFLKVNFDENKPMCKRLNVKVLPYFHFYRGADGQLE 167

Query: 754 SFSCSLAKFQK*KTPL--HCTAR 816
           +FSCSLAKFQK K  +  H TAR
Sbjct: 168 AFSCSLAKFQKLKDAIAVHNTAR 190